Mascot – General

• Mascot search overview
• A History of Mascot and Mowse
• Mascot training webcasts
• Mascot FAQ’s

Using Mascot

• Search parameter reference
• Data file format
• Scoring algorithm
• Result report overview
• Summary reports for PMF
• Summary reports for MS/MS
• MS/MS results interpretation
• Sharing result reports
• Error tolerant search
• Exporting result reports
• Decoy databases
• Top-down searches
• Percolator
• Quantitation
• Spectral Library searches
• Crosslink search

Mascot system administration

• Sequence database setup
• PC Hardware for Mascot Server

Instrument specific tips

• AB SCIEX Analyst
• AB SCIEX Data Explorer
• AB SCIEX 4000 / 5000 Series (TOF/TOF)
• Waters Masslynx
• Thermo Xcalibur

ASMS User Meeting presentations

• 2001 meeting
• 2002 meeting
• 2003 meeting
• 2004 meeting
• 2005 meeting
• 2006 meeting
• 2007 meeting
• 2008 meeting
• 2009 meeting
• 2010 meeting
• 2011 meeting
• 2012 meeting
• 2013 meeting
• 2014 meeting
• 2015 meeting
• 2016 meetings
• 2017 meetings
• 2018 meetings
• 2019 meetings
• 2020 meetings
• 2021 meetings

Protein identification

• Peptide Mass Fingerprint
• Sequence Query
• MS/MS Ion Search

Protein chemistry

• Post translational modifications
• Enzymes
• Autolysis
• Sequence databases
• Nucleic acid translation
• Amino acid reference
• Contaminants
• BLAST & FastA

Mass spectrometry

• MS/MS fragmentation
• Accuracy & resolution

Miscellaneous

• Privacy FAQ
• Web Browser Compatibility